PolishEM: image enhancement in FIB-SEM
Fernandez, Jose-Jesus; Torres, Teobaldo E.; Martin-Solana, Eva; Goya, Gerardo F.; Fernandez-Fernandez, Maria-Rosario
Publicación: BIOINFORMATICS
2020
VL / 36 - BP / 3947 - EP / 3948
abstract
A Summary: We have developed a software tool to improve the image quality in focused ion beam-scanning electron microscopy (FIB-SEM) stacks: PolishEM. Based on a Gaussian blur model, it automatically estimates and compensates for the blur affecting each individual image. It also includes correction for artifacts commonly arising in FIB-SEM (e.g. curtaining). PolishEM has been optimized for an efficient processing of huge FIB-SEM stacks on standard computers.
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